PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g16121.6.p
Common NameBRADI_3g16121
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 929aa    MW: 105490 Da    PI: 7.4878
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g16121.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.91.3e-2698186289
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       fY +YA +vGFsvr+++s+ksk +++i++ +fvCskeg+++e++    +k+r++ a+ r gC+a+l+v ++ d+kw+vtkl++eHnHe+
  Bradi3g16121.6.p  98 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSKEGFSKEKRVVeGKKTRKRPASIREGCNAMLEVLRRGDNKWVVTKLVKEHNHEV 186
                       9**************************************9998776356677777899*****************************96 PP

2FAR1576.4e-18220310291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraet..rtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       fY +YA +vGF+ r+++s+ks ++++ ++ ++vCs++ +++ +++++e+++r +a +  r gC+a +++ ++++++w+v+kl  eH+Hel+p
  Bradi3g16121.6.p 220 FYYSYAIRVGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRETNAEDAKRGQALDplRDGCEALFEIIRKQQDVWMVSKLIIEHTHELNP 310
                       9*******************9.6777***************99999777777665543399****************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-2498186IPR004330FAR1 DNA binding domain
PfamPF031018.8E-16220310IPR004330FAR1 DNA binding domain
PfamPF105517.7E-18411501IPR018289MULE transposase domain
PROSITE profilePS509669.891678726IPR007527Zinc finger, SWIM-type
PfamPF044346.9E-7678723IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-5701728IPR006564Zinc finger, PMZ-type
SuperFamilySSF525407.97E-6829901IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.850.108.6E-5829901IPR001752Kinesin motor domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007018Biological Processmicrotubule-based movement
GO:0003777Molecular Functionmicrotubule motor activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MEVEGQGMME PQGVELEDDS INFWASLGVS TTHVHGVDQM PALHNVQMVD HHVQLLPAAT  60
TVSHPQSVCK ELFPVEADPC LEPRVGMEFE SGEAAKTFYI AYAGRVGFSV RIARSRKSKC  120
SESIIMLRFV CSKEGFSKEK RVVEGKKTRK RPASIREGCN AMLEVLRRGD NKWVVTKLVK  180
EHNHEVGMPS TVHYIATESD TVVDPYIGME FESLESAKTF YYSYAIRVGF EARVRQSRKS  240
QDESLKMLKL VCSRHRYHSG RETNAEDAKR GQALDPLRDG CEALFEIIRK QQDVWMVSKL  300
IIEHTHELNP APPSRVCCVR SQGEILVIAK NFADTRNLLL NGQDSQPSRE IRYNDLGPED  360
AQSLLEYLRK VQVEDPAFFY AVQLDKNEQT VNIFWADANA RMAYYHFGDA VRFETAYRNS  420
KEHIPIVIFS GVNHHVQPVV FGCALLVDES EKSFAWLFEK WLEAMHVRPP VSFVTELNQQ  480
MAAAAAKVLP DTCHIFCEKH IFGTVKEELH NIYPELDHFI TDLRKCIDEC RIEESFESCW  540
DSVLIKHGFR NNEVLRSLYD IRQQWAPAYT KKSFHAANLL PQSSENFEKI IDKYFSSKTQ  600
LQVSVQQLGK AICSFYEKEA QADYLTMVQV PALRTASPME KQASLIFTRT VFDIFQEQFA  660
ESFGYHAERL EDGMVHRYRV TVDDGDEESH TVTFSPDQST VCCSCCLFES CGILCRHALR  720
VFIIEGVRFL PKAYVLKRWT KHAKSTVTLD NYTDLRGYSE DPSTSRYNDL CYDAIKCAKE  780
GSASSELYKI AKDALHKALD EVMSLRNTRQ QNLPNRTTSL KSPVKKFGKA KDTSAKSLKS  840
CAATVCGLVL VQFNTYAMRI RTMKIILVAL AGSEKAWKNG AEGQVCFEVK TIKKNTNALK  900
APNYCLQANQ ITCLTTYRSL TYFSRCTG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2527740.0AK252774.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf172k23, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234363.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A0Q3F6C20.0A0A0Q3F6C2_BRADI; Uncharacterized protein
STRINGMLOC_56869.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-126FAR1-related sequence 5